Index of /educationp/ACADEMIC/GEP207A/SETUP
Name Last modified Size Description
![[DIR]](/icons/back.gif)
Parent Directory 18-Apr-2005 22:58 -
![[TXT]](/icons/text.gif)
ALPHA1.TO_ 10-Nov-1992 20:00 1k
ALPHA2.TO_ 10-Nov-1992 20:00 2k
BRUSSEL.SI_ 10-Nov-1992 20:00 1k
BRUSSEL.TO_ 10-Nov-1992 20:00 1k
BTK-MCA.TXT 17-Nov-1992 20:00 4k
COMMDLG.DL_ 22-Mar-1992 20:00 50k
COPYING 03-Oct-1990 20:00 12k
DECROLY.TO_ 09-Feb-1993 20:00 1k
DECROLY1.SI_ 09-Feb-1993 20:00 1k
DECROLY2.SI_ 09-Feb-1993 20:00 1k
DECROLY3.SI_ 09-Feb-1993 20:00 1k
FILE_ID.DIZ 09-May-1993 20:00 1k
GEPASI.EX_ 09-May-1993 20:00 81k
GEPASI.HL_ 09-May-1993 20:00 49k
GEPASI.INF 09-May-1993 20:00 3k
GEPASI.IN_ 09-May-1993 20:00 1k
GEPASI.MS_ 21-Nov-1992 20:00 4k
GEPASI.PI_ 10-Nov-1992 20:00 1k
GEPASI.WR_ 10-Nov-1992 20:00 7k
GEPASI_R.BA_ 10-Nov-1992 20:00 1k
GEPASI_R.PI_ 10-Nov-1992 20:00 1k
GWSIM.EX_ 09-May-1993 20:00 65k
GWTOP.EX_ 09-May-1993 20:00 47k
MSCOMSTF.DL_ 22-Mar-1992 20:00 40k
MSCUISTF.DL_ 10-Nov-1992 20:00 11k
MSDETECT.IN_ 22-Mar-1992 20:00 5k
MSDETSTF.DL_ 22-Mar-1992 20:00 15k
MSINSSTF.DL_ 22-Mar-1992 20:00 40k
MSSHLSTF.DL_ 22-Mar-1992 20:00 9k
MSUILSTF.DL_ 22-Mar-1992 20:00 4k
SEQFB.TO_ 10-Nov-1992 20:00 1k
SEQFB_1.SI_ 10-Nov-1992 20:00 1k
SEQFB_2.SI_ 10-Nov-1992 20:00 1k
![[ ]](/icons/unknown.gif)
SETUP.EXE 22-Mar-1992 20:00 24k
SETUP.LST 10-Nov-1992 20:00 1k
SETUPAPI.IN_ 22-Mar-1992 20:00 13k
TEST1.SI_ 10-Nov-1992 20:00 1k
TEST2.SI_ 10-Nov-1992 20:00 2k
TEST3.SI_ 10-Nov-1992 20:00 2k
TEST4.SI_ 10-Nov-1992 20:00 2k
TEST5.SI_ 10-Nov-1992 20:00 2k
USER-DEF.KI_ 09-May-1993 20:00 1k
VER.DL_ 22-Mar-1992 20:00 6k
_MSSETUP.EX_ 22-Mar-1992 20:00 7k
_MSTEST.EX_ 22-Mar-1992 20:00 54k
INDEX
1 - General
2 - Brief description
3 - Installation
4 - Using GNUPLOT with GEPASI
======================================================================
1 - General
This is GEPASI 2.0, a general purpose simulator of metabolic pathways.
It is a directed towards research and education; it is meant to be a
very useful tool for modelling biochemical pathways, chemical
reactions,etc. GEPASI is free software covered by the GNU general
public license, version 1.
This version of GEPASI runs under MS-Windows 3.1 in 386 enhanced mode,
on 80386SX and above microprocessors. A maths co-processor is not
needed but should accelerate the simulations by at least a factor of
10.
======================================================================
2 - Brief description
In order to simulate bichemical pathways, the user must first define
the reactions that are part of the pathway, all its parameters and
initial concentrations of the metabolites (chemical species). GEPASI
then determines the dynamics and steady state (if there is one),
including the coefficients defined in Metabolic Control Analysis.
GEPASI can be used to study metabolic regulation, chemical and enzyme
kinetics including oscillatory (limit cycle) and chaotic reactions.
The file GEPASI.WRI contains a cut-down version of a paper to appear
in "Modern trends in Biothermokinetics", edited by J.-P. Mazat, S.
Schuster and M. Rigoulet and published by Plenum Press with a short
description of GEPASI. Another more detailed paper has been submitted
to the journal "Computer Applications in the Biosciences".
For more detailed information see the help file (GEPASI.HLP). The
subjects of metabolic simulation and metabolic control analysis are
discussed in the mailing list btk-mca. To subscribe to this list send
a mail message to biosci@net.bio.net, post to the list to
btk-mca@net.bio.net.
======================================================================
3 - Installation
a) from a disk
1 - put the installation disk in one drive (for example A:)
2 - In MS-Windows' Program Manager select File-Run and enter
A:SETUP.EXE
b) from the zip file
1 - unzip all files to a disk or directory
2 - In MS-Windows' Program Manager select File-Run and enter
A:SETUP.EXE (or the complete path where you've unzipped
the files to)
======================================================================
4 - Using GNUPLOT with GEPASI
To facilitate and speed up the production of plots of the data
generated by GEPASI, this can link to the popular freeware program
GNUPLOT. GNUPLOT has been included in GEPASI's distribution disks.
If you obtained GEPASI from an on-line archive then you need to get
GNUPLOT as well; look in directories named 'windows3' or 'plot'.
Instructions to make GEPASI aware of your copy of GNUPLOT (not needed
for the diskette version):
after installing GNUPLOT,
1 - In GEPASI - Simulation, select Plot...
2 - after pressing OK, find the file WGNUPLOT.EXE in the directory
where you've installed GNUPLOT, select it and press ENTER.
3 - from now on use Plot... to make your plots!
GEPASI 2.0 (c) 1989,1992,1993 by Pedro Mendes.
prm@aber.ac.uk